@article {KNZ001278,
	title = {Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites},
	journal = {Molecular Ecology},
	volume = {19},
	year = {2010},
	pages = {41 -53},
	abstract = {We analysed two sites within and outside an urban development in a rural background to estimate the fungal richness, diversity and community composition in Quercus spp. ectomycorrhizas using massively parallel 454-sequencing in combination with DNA-tagging. Our analyses indicated that shallow sequencing (\~{}150 sequences) of a large number of samples (192 in total) provided data that allowed identification of seasonal trends within the fungal communities: putative root-associated antagonists and saprobes that were abundant early in the growing season were replaced by common ectomycorrhizal fungi in the course of the growing season. Ordination analyses identified a number of factors that were correlated with the observed communities including host species as well as soil organic matter, nutrient and heavy metal enrichment. Overall, our application of the high throughput 454 sequencing provided an expedient means for characterization of fungal communities.},
	keywords = {LTER-KNZ},
	doi = {10.1111/j.1365-294X.2009.04483.x},
	author = {A. Jumpponen and Jones, K.L. and Mattox, J.D. and Yeage, C.}
}
@article {KNZ001320,
	title = {Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliage},
	journal = {Plant Signaling and Behaviour},
	volume = {5},
	year = {2010},
	pages = {1157 -1161},
	abstract = {Diverse fungal mutualists, pathogens and saprobes colonize plant leaves. These fungi face a complex environment, in which stochastic dispersal interplays with abiotic and biotic filters. However, identification of the specific factors that drive the community assembly seems unattainable. We mined two broad data sets and identified chemical elements, to which dominant molecular operational taxonomic units (OTUs) in the foliage of a native tree respond most extremely. While many associations could be identified, potential complicating issues emerged. Those were related to unevenly distributed OTU frequency data, a large number of potentially explanatory variables, and the disproportionate effects of outlier observations.},
	keywords = {LTER-KNZ},
	doi = {10.4161/psb.5.9.12681},
	author = {A. Jumpponen and Keating, K. and Gadbury, G.L. and Jones, K.L. and Mattox, J.D.}
}
